comethyl: An R package for weighted region comethylation network analysis

Comethyl builds upon the WGCNA package to identify and interpret modules of comethylated regions from whole-genome bisulfite sequencing data. Regions are defined from clusters of CpG sites or from genomic annotations, and then percent methylation values are used to identify comethylation modules. Interesting modules are identified and explored by comparing with sample traits and examining functional enrichments. Results are then visualized with high-quality, editable plots from ggplot2.

See also

• GitHub: https://github.com/cemordaunt/comethyl

• Documentation and vignettes: https://cemordaunt.github.io/comethyl/

Author

Charles Mordaunt